PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4407.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25915.5 Da    PI: 9.5374
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4407.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.8e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +ri+n++nrqvtfskRr g++KKA EL +LCda+ a+i+fsstg+ly+++s
  MLOC_4407.1  9 ERIDNTTNRQVTFSKRRGGLMKKARELAILCDADLALIVFSSTGRLYDFAS 59
                 69***********************************************86 PP
2K-box70.55.3e-2482171998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  + +++a+ +q+e++ L+++++nLq+++R+llGe+L+  ++++Lq L +q+e sl ++R++K++++ ++i++l +k   +q+en +L kkl
  MLOC_4407.1  82 NPTSEAKLWQREVTTLRQQVQNLQHNNRQLLGEELSGTTVRDLQFLVNQVEISLHSVRKRKDQVMAAEIHQLNQKGFLTQKENIELGKKL 171
                  66788999******************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.371161IPR002100Transcription factor, MADS-box
CDDcd002651.52E-40277No hitNo description
SuperFamilySSF554552.49E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2385171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.98287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIAIER IDNTTNRQVT FSKRRGGLMK KARELAILCD ADLALIVFSS TGRLYDFASS  60
SGMEAILERY QEAKEEQCGV LNPTSEAKLW QREVTTLRQQ VQNLQHNNRQ LLGEELSGTT  120
VRDLQFLVNQ VEISLHSVRK RKDQVMAAEI HQLNQKGFLT QKENIELGKK LSIAHEHNIE  180
LKKKLSASMA SSEQQASGSN SKAAAGLLLP TRVREPNINL ELRQQEHEAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21175174MEF2C
5f28_B1e-21175174MEF2C
5f28_C1e-21175174MEF2C
5f28_D1e-21175174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029030.0AM502903.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31C (WM31C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153469.11e-153MADS-box transcription factor 25-like
SwissprotQ84NC51e-104MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLM0W5R61e-167M0W5R6_HORVV; Uncharacterized protein
STRINGMLOC_4407.11e-167(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-62AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]