PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44311.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 205aa    MW: 23016.9 Da    PI: 7.8921
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44311.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.4e-0911491250
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                   NR +A rs +RK  +i eLe+kv +L++e ++L  +l 
  MLOC_44311.2 11 ANRQSAARSKERKARYITELERKVHTLQTEATTLSAQLT 49
                  6*********************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502179.243865IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-7864IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-10857No hitNo description
SuperFamilySSF579596.26E-10855No hitNo description
CDDcd147032.09E-20854No hitNo description
PfamPF001701.8E-7951IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
FLSFLCFRIL ANRQSAARSK ERKARYITEL ERKVHTLQTE ATTLSAQLTL FQRDTTGLSA  60
ENTELKIRLQ AMELQAQLRD ALNNTLKQEL ERLKIATGEM TKPDEAYNTG MHHVPYNPSF  120
FQLSEQHAPQ HHSSVHQLPS QFQPPHPNVP SHQMLSHPNT FPDMMQQDSL GRFQGLDIGK  180
GSAAVKLEAE AAVRSEGSSI SAGEK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44311.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749000.0AK374900.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3079L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158207.11e-138transcription factor RF2b-like isoform X1
SwissprotQ6S4P48e-89RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A287H7V01e-143A0A287H7V0_HORVV; Uncharacterized protein
STRINGMLOC_44311.11e-144(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.15e-57bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]