PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44531.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 215aa    MW: 23996.3 Da    PI: 8.4822
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44531.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.67.7e-091499286
      trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                  W++ e+ aL++a   m  r +++ l+   W+ v +++      +   f+rs +qC++++  l+ +y+k+ +  +      +s +++f+ql+
  MLOC_44531.1 14 WSDGETSALVDAWGPMYLRRNQNPLAVEEWRVVCSAVnaqraaEGCRFNRSLVQCQKRIYTLKDQYQKELAKGRP-----TSGWRHFTQLR 99
                  *************************************999954445569******************99877775.....35699999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-1413100No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MPSSKKSPGA RGPWSDGETS ALVDAWGPMY LRRNQNPLAV EEWRVVCSAV NAQRAAEGCR  60
FNRSLVQCQK RIYTLKDQYQ KELAKGRPTS GWRHFTQLRA FLADSPPGFA TKTTAASGKK  120
EKEEEVEEAS PCFPETKPAT DKNEEVVGCG CELVGSVRCC PAATVTKLAE VYERVEMKRL  180
GVKEKEMEME KNTISRCILG HKKMKVENPE ETHGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181526.11e-114trihelix transcription factor ASIL1-like
TrEMBLM0W7I01e-158M0W7I0_HORVV; Uncharacterized protein
STRINGMLOC_44531.11e-159(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-09sequence-specific DNA binding transcription factors