PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44566.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 297aa    MW: 31373.9 Da    PI: 9.7867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44566.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1377126255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+ h + Er RR+r+ + f +L  llP++   p  K++K++i+ +A++YIksL+
  MLOC_44566.1  77 RELHIITERERRRRMSEMFTKLHGLLPTL---P-DKVDKSSIVMEAIHYIKSLE 126
                   7889************************6...3.9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.42E-1673137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.70475125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1477139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-1177126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-881131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-690130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAQGNDNHAP PATSSDSMSS GKGGSRLVLG GAMDKGKGVP KVEEEEGCRS KGKIMTAPVV  60
GARSRRDGRS RGRRGDRELH IITERERRRR MSEMFTKLHG LLPTLPDKVD KSSIVMEAIH  120
YIKSLEGTLS ELERHKLERD LARGKPAAAA NGGVACSAVA AAPMAMASPV TGLSGCGIWQ  180
TGATPAPSMA LGAVTAAPAP VALQTWSGPN VVLSLSGNNA YIHMSVARRS GVLTMVMAVL  240
EKHGIDVITS GISSDRSQSM FTIQARINGG SNQFGDHVAC DEIYKLAVSE IMVWLSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731550.0AK373155.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146364.11e-152transcription factor bHLH95-like
TrEMBLF2EAI00.0F2EAI0_HORVV; Predicted protein
STRINGMLOC_44566.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-29bHLH family protein