PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44654.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 123aa    MW: 13701.5 Da    PI: 6.2201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44654.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.0006224551854
                  HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  ++   L++l+ +      +K + a++L +A+ YI+ L
  MLOC_44654.2 24 DRVTALQQLVSPF-----GKTDTASVLHEAIGYIRFL 55
                  5556677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.607655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-111670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-81663IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-51860No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
CQLDIAFDWN LPCVWQVRKE KLGDRVTALQ QLVSPFGKTD TASVLHEAIG YIRFLHEQVA  60
SLSSPYFISG PMHLQHKQGS DDGEAKEDLR SRGLCLVPVA STYTMASDTA PELWHPTFGG  120
TFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44654.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649950.0AK364995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030C04.
GenBankAK3706060.0AK370606.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2113C16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198027.15e-60transcription factor bHLH123-like
SwissprotQ8GXT33e-38BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A287G0N93e-76A0A287G0N9_HORVV; Uncharacterized protein
STRINGMLOC_44654.32e-72(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]