PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44850.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 260aa    MW: 28598.4 Da    PI: 4.7072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44850.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-1277123455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ++ ++Er RR+r+N+++ +Lr ++P+ +      K++Ka+i + A+ YI  Lq
  MLOC_44850.2  77 KNIIMERDRRRRLNEKLYNLRGVVPNiS------KMDKASIIQDAIAYIEALQ 123
                   56689*********************66......*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-1772138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65673122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-1374127No hitNo description
PfamPF000101.2E-977123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1578138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1479128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEADMDMSLD FSWETPNFFE AQVLELAVVD SLVDCCSMYL SAEDSLSGLY SCYDDSSSPD  60
GASSWSTATT RATRASKNII MERDRRRRLN EKLYNLRGVV PNISKMDKAS IIQDAIAYIE  120
ALQEQERQLL AEISDLETHN CTASVGSQAE EDSADLPRRR KMRRTSSASS INDAITSPVA  180
YPVEILELDV TNVSEKLSVV SLRHGKARDA MAKVCGALQS LCLKVITASV TTVAGSMVHT  240
IFVEVTIHRF AVFPTQSIAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598500.0AK359850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1104J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176412.11e-156transcription factor bHLH35-like isoform X3
TrEMBLA0A287I9841e-178A0A287I984_HORVV; Uncharacterized protein
TrEMBLF2D7I81e-178F2D7I8_HORVV; Predicted protein
STRINGMLOC_44850.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.23e-42bHLH family protein