PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44947.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 197aa    MW: 21439.9 Da    PI: 9.7629
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44947.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.5e-3254112159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK vk+s fprsYYrCt a+C vkk vers++dp++v++tYeg+H h+
  MLOC_44947.1  54 LDDGYRWRKYGQKAVKNSSFPRSYYRCTAARCGVKKLVERSQQDPSTVVTTYEGRHGHP 112
                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-3240114IPR003657WRKY domain
SuperFamilySSF1182902.09E-2847114IPR003657WRKY domain
PROSITE profilePS5081130.45849114IPR003657WRKY domain
SMARTSM007747.0E-3654113IPR003657WRKY domain
PfamPF031061.3E-2555112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
RRGSPAPEEG DEEGSAGHGS CRSDEKEQKK KVKGEKKARG SRVAFATKSE VDHLDDGYRW  60
RKYGQKAVKN SSFPRSYYRC TAARCGVKKL VERSQQDPST VVTTYEGRHG HPSPVAAHRG  120
ARMLMATGAD TAYSLAALQH QQHGFFPAGA DVYGRMCVPP TTAAAPAVPH RSSEYGGMVS  180
YADLLPDAVM GYQQGHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27471141077Probable WRKY transcription factor 4
2lex_A2e-27471141077Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672160.0AK367216.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180590.11e-110probable WRKY transcription factor 71 isoform X2
TrEMBLA0A287GR861e-141A0A287GR86_HORVV; Uncharacterized protein
STRINGMLOC_44947.11e-144(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.18e-40WRKY DNA-binding protein 23