PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4507.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 124aa    MW: 13456.8 Da    PI: 8.2592
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4507.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-053052123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F ++  L  H++ H
  MLOC_4507.1 30 FTCTYCDKKFYSSQALGGHQNAH 52
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.43E-72166No hitNo description
PROSITE profilePS5015711.3853057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MEFNGGEGEG DIDLNLSLHR ASSPEPLGYF TCTYCDKKFY SSQALGGHQN AHKFERSVAK  60
RTRELAAARR HGHAGLVGAG EEASRRGKDP TSNAAGSSSH RRASSPETAR RDLITEEIDL  120
SLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4507.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057477e-48AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149657e-48AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126177e-48CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8358197e-48CT835819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017B14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186744.11e-81zinc finger protein 2-like
TrEMBLM0W8U73e-85M0W8U7_HORVV; Uncharacterized protein
STRINGMLOC_4507.24e-86(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-16zinc finger protein 2