PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_45114.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bHLH

Protein Properties

Length: 148aa MW: 16257.5 Da PI: 9.7585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_45114.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	89	124	1	39
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKls 39 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +s+++s MLOC_45114.3 89 QRMTHIAIERNRRRQMNEYLAVLRSLMPES---YSRRVS 124 79***************************9...888866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.91E-10	79	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-9	87	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.91E-8	87	122	No hit	No description
PROSITE profile	PS50888	10.918	88	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-9	89	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MTLDALCAAT DVLVYDTFNA AAAASAAPAE DTLLFGDAAG SAWMAGSAPA AAAQAVPAVP 60 VEEGEKAQGR RKRRRRARSC KNREEAESQR MTHIAIERNR RRQMNEYLAV LRSLMPESYS 120 RRVSTHAHIV APRRIPDTFS TPCVEFLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	75	RRKRRRR
2	70	74	RKRRR
3	70	77	RKRRRRAR
4	89	100	RMTHIAIERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_45114.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662981	1e-56	AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBank	AP014960	1e-56	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-56	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855235	1e-56	CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174319.1	1e-39	transcription factor bHLH94-like
TrEMBL	A0A287JBR9	1e-46	A0A287JBR9_HORVV; Uncharacterized protein
STRING	MLOC_45114.1	1e-79	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	8e-16	bHLH family protein