PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_45867.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 215aa    MW: 24018.3 Da    PI: 8.1484
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_45867.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-106811796
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE.EEE-SSSEE..EEEE CS
            B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv.Fkldgrsefelvvkv 96
                  ++ k+f+ +++g+   + ++ l++++  ++++k+ ++++ g+ vl++GW +F +   L+++D+++ F+++g+s+f   v +
  MLOC_45867.1  6 IIQKEFVHRFKGE--IPGEIELQTKNKCTYKIKV-VKNQEGQLVLAAGWGRFIEKFSLQTRDSIIlFSYNGKSQF--SVII 81
                  5889999888766..5568***************.6888888******************998653789888888..5544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.207185IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-10683IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-7780IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-11783IPR015300DNA-binding pseudobarrel domain
CDDcd100177.27E-8983No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
NVFPQIIQKE FVHRFKGEIP GEIELQTKNK CTYKIKVVKN QEGQLVLAAG WGRFIEKFSL  60
QTRDSIILFS YNGKSQFSVI ILDQLGREKA SSVVNPFPPR ALERHTNCAE TVSQHPSDGH  120
PLPVERLVQS TDAAANILHR PTQIPETADC SLPLMIMPST AHFDVHHQQQ AMLMQPPLNH  180
SSSSEASAGE GDGSFSSHDH VQNALGFVRV VRRKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_45867.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-128HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014750916.13e-31putative B3 domain-containing protein Os08g0325100
TrEMBLA0A287V3821e-130A0A287V382_HORVV; Uncharacterized protein
STRINGMLOC_45867.11e-160(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-07B3 family protein