PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_46530.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 36aa    MW: 4072.62 Da    PI: 8.0381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_46530.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-081536122
                     TSSS-HHHHHHHHHHHHHTTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg 22
                     +g+WT+eEd+ lv+++++ Gg+
     MLOC_46530.1 15 KGPWTEEEDKTLVEYIQKRGGN 36
                     79****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.53E-7636IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-9635IPR009057Homeodomain-like
PROSITE profilePS5129412.5511036IPR017930Myb domain
PfamPF002491.2E-51535IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 36 aa     Download sequence    Send to blast
MGRSPCCCRD ASVKKGPWTE EEDKTLVEYI QKRGGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_46530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169243.19e-17transcription factor RAX1-like
TrEMBLA0A453CWA65e-16A0A453CWA6_AEGTS; Uncharacterized protein
STRINGMLOC_46530.14e-19(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-12MYB-like 102