PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_48372.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 175aa MW: 18722.4 Da PI: 7.9581

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_48372.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.1	1.8e-14	63	150	5	96
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 +s+v + ++v+p++ a +k+++ tlt +grsWe+++ +++++ l++GW++F+ +n L+ gD +vF+l+ g+ ++ ++v+v MLOC_48372.2 63 VCKSHVQTPFQVVVPRSLAPFLP-PKPTPATLT---WQGRSWEMRF--TGGRQVQRLEAGWRSFALDNALRLGDGCVFELVgGDgEGIVFRVQV 150 56789999999999999995553.444554454...699*****..9999999**********************994444444455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.86E-16	56	152	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-16	56	153	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.20E-14	57	152	No hit	No description
SMART	SM01019	2.2E-6	59	154	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.449	59	154	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.2E-12	62	148	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MHADAGGKDH GVASSTGEPS QAAISAGPQD KPDPESAKAC LEMEKTQPSI LPLLGKPYFA 60 CVVCKSHVQT PFQVVVPRSL APFLPPKPTP ATLTWQGRSW EMRFTGGRQV QRLEAGWRSF 120 ALDNALRLGD GCVFELVGGD GEGIVFRVQV LRAEIPASIR QRAGGYTPSS PIVLD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_48372.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147560.1	1e-111	B3 domain-containing protein Os04g0386900-like
Swissprot	Q7XLP4	4e-66	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	M0WCA2	1e-125	M0WCA2_HORVV; Uncharacterized protein
STRING	MLOC_48372.1	1e-121	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-07	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]