PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_48630.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 54aa    MW: 6267.08 Da    PI: 5.5632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_48630.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-052447122
                  EEET..TTTEEESSHHHHHHHHHH CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt 22
                  y+C+   C +sF +k +L  H r 
  MLOC_48630.1 24 YTCGieGCWMSFDTKRELSLHERD 47
                  99*******************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
TKQLKKATGE ERTPRDHPMH VEGYTCGIEG CWMSFDTKRE LSLHERDLCV LDDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_48630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.12e-23lysine-specific demethylase JMJ705-like
TrEMBLA0A287J4371e-31A0A287J437_HORVV; Uncharacterized protein
STRINGMLOC_48630.12e-33(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.15e-07relative of early flowering 6