PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_49032.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 173aa    MW: 17512.5 Da    PI: 4.8842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_49032.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-063312255
                  HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   L+el+P+a      K +Ka++L + ++Y+k Lq
  MLOC_49032.1  3 ALQELVPSA-----NKTDKASMLDEIIDYVKFLQ 31
                  79******8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.484130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-10140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-6135No hitNo description
SuperFamilySSF474593.93E-9240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKALQELVPS ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVGP LAAGLSSESS  60
GNGNGTSSSG DGNGEDNNGG STLRATEQQV ARLMEEDMGT AMQYLQGKGL CLMPISLASV  120
ISSATSSSLR SATRPAGNAG GPLHEGGSPA SPRLVNSGVS VDGSRTIGDD GRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_49032.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742250.0AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170436.11e-87transcription factor bHLH82-like
SwissprotQ9LSQ39e-55BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A287V1991e-118A0A287V199_HORVV; Uncharacterized protein
TrEMBLM0WCV31e-119M0WCV3_HORVV; Uncharacterized protein
STRINGMLOC_49032.11e-120(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-34LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]