PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4945.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 331aa    MW: 35766.3 Da    PI: 7.9278
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4945.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30171230159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++ve tYegeHnh+
  MLOC_4945.1 171 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSMVEATYEGEHNHP 230
                  58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.693166232IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-29167232IPR003657WRKY domain
SuperFamilySSF1182901.22E-25168232IPR003657WRKY domain
SMARTSM007742.4E-35171231IPR003657WRKY domain
PfamPF031065.6E-25172230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
METARWSPVC LDLMVGLPMV REPSPARRAG MRTQADIASS PCGRAASMTN GEASKMMEAK  60
FTEVSEENRR LTEMIGYLYA NQSFARHSPE GDGEQPASTA ASPTSPVGKK RSRESMDTSD  120
SGDGNSDKKM TGMVEAEHVD VESPLSNGTC RRIKVKRVCT RIDPSDTSLV VKDGYQWRKY  180
GQKVTRDNPS PRAYFRCAFA PSCPVKKKVQ RSAEDSSMVE ATYEGEHNHP RPTRAGELPS  240
CAAGGGGPVP CSISINSSGP TITLDLTKDG GGVQVVEAAG EAQPDLKKVC REVASPEFRA  300
ALVEQMAREL TGDRKFTDAL AAAILRKLPD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-191702321374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_4945.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597060.0AK359706.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147410.10.0WRKY transcription factor WRKY76-like isoform X2
SwissprotQ6IEK51e-139WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLM0WDA00.0M0WDA0_HORVV; Uncharacterized protein
STRINGMLOC_4945.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-52WRKY DNA-binding protein 40