PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_49582.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NF-YC

Protein Properties

Length: 63aa MW: 7213.4 Da PI: 6.499

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_49582.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	91.3	8.9e-29	3	61	6	61
NF-YC 6 wekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlr 61 w++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++acelfilel r MLOC_49582.1 3 WAEQsreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACELFILELNHR 61 77777779***********************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.28E-16	7	59	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.1E-24	13	61	IPR009072	Histone-fold
Pfam	PF00808	1.7E-13	20	59	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
VCWAEQSREI EATTDFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA CELFILELNH 60 RGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-28	6	62	3	59	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_49582.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367326	2e-86	AK367326.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054P03.
GenBank	BT009224	2e-86	BT009224.1 Triticum aestivum clone wle1n.pk0076.h7:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574700.1	4e-35	nuclear transcription factor Y subunit C-6
Swissprot	Q9XE33	2e-34	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A446UD24	6e-34	A0A446UD24_TRITD; Uncharacterized protein
TrEMBL	Q2L3T9	6e-34	Q2L3T9_WHEAT; Hap5-like protein
STRING	MLOC_49582.1	2e-39	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-32	nuclear factor Y, subunit C3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]