PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_50426.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GeBP
Protein Properties Length: 236aa    MW: 26168.9 Da    PI: 6.6961
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_50426.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57347.16.8e-1549138297
        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv.sksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                   +f+r+ws +De+ +L +l   ++++g+ p+ d  a+++ + ++++ ++  +++l +K+  LK+++   +kk   g+    skehd+ +++lsk++Wg
  MLOC_50426.1  49 AFSRIWSTDDEVRILEALAAHQKQHGTLPQPD--ALVDALAGKLDNRAyGSKELQSKVATLKRRYLALSKK---GEV--PSKEHDRRVLDLSKIVWG 138
                   699***********************887775..8999999999887516889****************99...555..5799*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-2050138IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MLALKQAPEE EEEDESEEEA PPPKPVLALK QAPEGLKPPA AAETKKPAAF SRIWSTDDEV  60
RILEALAAHQ KQHGTLPQPD ALVDALAGKL DNRAYGSKEL QSKVATLKRR YLALSKKGEV  120
PSKEHDRRVL DLSKIVWGGG DMFTAAAASA KAAANDHTRK GFEEMCTLYP YLADQVKELD  180
AASPGIFKRQ FGMMDDDKAR SMDEKIKKQR VAQMKVELRR HDLAREVTKA IIDLVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_50426.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691530.0AK369153.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200172.11e-124splicing factor, arginine/serine-rich 19-like
TrEMBLF2DZ331e-168F2DZ33_HORVV; Predicted protein
TrEMBLM0WEG91e-170M0WEG9_HORVV; Uncharacterized protein
STRINGMLOC_50426.11e-170(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.12e-08DNA-binding storekeeper protein-related transcriptional regulator