PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_50966.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CO-like
Protein Properties Length: 381aa    MW: 41630.3 Da    PI: 5.1434
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_50966.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217e-07435536
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                   C+ ++e++ +++C+++   lC +C  + H+ 
  MLOC_50966.3  4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35
                  6***************************9954 PP
2zf-B_box23.11.5e-074785537
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                   C+++ ++++   C + +  lC++C  ++H g       H
  MLOC_50966.3 47 LCDRCASQPAAVRCLEENISLCQNCDWNGH-GatslaagH 85
                  7****************************9.435555555 PP
3CCT62.11.8e-21324367144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   R  al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  MLOC_50966.3 324 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 367
                   6789*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.1E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
CDDcd000211.30E-5435No hitNo description
PROSITE profilePS501198.6034390IPR000315B-box-type zinc finger
CDDcd000210.002184776No hitNo description
SMARTSM003360.714890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.932324366IPR010402CCT domain
PfamPF062032.0E-16324366IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANSLSR RHMRTLLCDR CASQPAAVRC  60
LEENISLCQN CDWNGHGATS LAAGHLRQTI NCYSGCPSSE ELARIWSFDF DAPSAAAEPN  120
CEEGISMMSI NDSGVSNHCH DQQDSSLLDI ANTSLISDPH TGEKLKSSGE MNLRPLPTHQ  180
PAQSVSMAPK VPCVTDDDMF NDGSIYENFC VDDAGLTFEN YEELFGTPHI QTEQLFDDAG  240
IDSYFGMKEM PAADCNELKP MQPECSNAVS ADSSLCVPAR QAISSISLSF SGFTGEGNAG  300
DHQDCGVSPW LHPGPEGSSA SGSRGSALSR YMEKKKRRKF DKKIRYASRK ARADVRKRVK  360
GRFVKAGEAY DYDPLCDTRS Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333337KKKRR
2333338KKKRRK
3334338KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_50966.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2526660.0AK252666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173273.10.0zinc finger protein CONSTANS-LIKE 10-like isoform X2
SwissprotQ9LUA91e-113COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLM0WFB80.0M0WFB8_HORVV; Uncharacterized protein
STRINGMLOC_50966.90.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-89B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]