PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51032.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 166aa    MW: 19203.8 Da    PI: 9.7125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51032.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-055376323
                  ET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  3 Cp..dCgksFsrksnLkrHirt.H 23
                  C+  dC+ sFs ksnL++Hi+  H
  MLOC_51032.5 53 CSfkDCKHSFSKKSNLHKHIKAvH 76
                  8888****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355312142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.42E-73289No hitNo description
Gene3DG3DSA:3.30.160.606.2E-63273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.4245181IPR007087Zinc finger, C2H2
SMARTSM003550.0865176IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-475104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.682108IPR007087Zinc finger, C2H2
SMARTSM003554.882108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKTFTNVECL KAHNQSCHQY VQCDTCETKQ LKKNFKRHQR MHEGSLVTER INCSFKDCKH  60
SFSKKSNLHK HIKAVHEQSR PFTCGFSGCG QKFSYKHVRD NHEKSSVHVL FESDFVEADE  120
QLRPHPGGRK RKPISVDTLM RKRVAAPDAP PAYSDGTEYL RWLLSG
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51032.5
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728170.0AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149307.11e-112transcription factor IIIA-like
RefseqXP_020149308.11e-112transcription factor IIIA-like
RefseqXP_020149309.11e-112transcription factor IIIA-like
RefseqXP_020149310.11e-112transcription factor IIIA-like
SwissprotQ84MZ41e-47TF3A_ARATH; Transcription factor IIIA
TrEMBLF2E9J21e-119F2E9J2_HORVV; Predicted protein (Fragment)
STRINGMLOC_51032.81e-118(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.18e-51transcription factor IIIA