PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51143.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 270aa    MW: 30022 Da    PI: 10.1182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51143.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19191239355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae+Aa+a+++a+++++g
  MLOC_51143.1 191 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEGAARAYDRAARRIRG 239
                   9*******.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-31190248IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21190248IPR016177DNA-binding domain
SMARTSM003801.4E-37190253IPR001471AP2/ERF domain
PROSITE profilePS5103224.421190247IPR001471AP2/ERF domain
PfamPF008474.2E-12191239IPR001471AP2/ERF domain
CDDcd000187.53E-18191248No hitNo description
PRINTSPR003676.1E-11191202IPR001471AP2/ERF domain
PRINTSPR003676.1E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MIRRRTVSLA VTARGKTAAR GVHRFARPIE EGSCELPRRP GIHSRAAYEF PAPLPYLSAR  60
ATRLRSSPLS PHLLYHPISP PFFTGSLVPT AQLHISALLY LLTYSMCGGA IISDFIPERD  120
HRGGGKRGPS TADFWTHAAA TEFDDPTDHH YFYPDDLTGA GACTFPPEHQ GTCRVRAAEE  180
PSRKRERKTM YRGIRRRPWG KWAAEIRDPA KGARVWLGTF ATAEGAARAY DRAARRIRGT  240
KAKVNFPNED PPLDLDDYDL LNGGYNVAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22191247360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-22191247663ATERF1
3gcc_A7e-22191247663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183197KRERKTMYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51143.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768707e-93EU976870.1 Zea mays clone 992413 mRNA sequence.
GenBankKJ7283487e-93KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195438.19e-67ethylene-responsive transcription factor ERF071-like isoform X1
SwissprotP427362e-35RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A287H8T11e-166A0A287H8T1_HORVV; Uncharacterized protein
STRINGMLOC_51143.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.16e-28ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]