PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51191.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 257aa    MW: 28730.2 Da    PI: 7.7669
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51191.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.21.3e-33661572102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sw   gnsfvv+d + f+  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+ + F +g+kell++i+
  MLOC_51191.6  66 FLNKTYEVVDDHSTDTIVSWGVAGNSFVVWDAHAFSMVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAAEGFLRGQKELLKTIR 153
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++ 
  MLOC_51191.6 154 RRRP 157
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.5E-5562155IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.6E-3662155IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3262155IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-3066155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-196689IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-19104116IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340105129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-19117129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDPFHGIVKE EEFDFAGAAA DGYSPSSWGS SPSSWGSSQS SWVGGGALAE LPRPMDGLGE  60
AGPTPFLNKT YEVVDDHSTD TIVSWGVAGN SFVVWDAHAF SMVLLPRYFK HSNFSSFVRQ  120
LNTYGFRKVD PDRWEFAAEG FLRGQKELLK TIRRRRPQSS GTPGQQQQQQ GGVCLEVGHF  180
GHDGEVQQLK RDKGTLIAEV VKLRQEQQAT RVQMQAMEAR LAATEQKQQQ MTVFLARAMK  240
SPSFLQMLVE RQDQSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-255715517129Heat shock factor protein 1
5d5v_B7e-255715517129Heat shock factor protein 1
5d5v_D7e-255715517129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51191.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3570220.0AK357022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1044E17.
GenBankAK3578550.0AK357855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063H19.
GenBankAK3583800.0AK358380.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F04.
GenBankAK3770820.0AK377082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3147M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200656.11e-151heat stress transcription factor A-2a-like
RefseqXP_020200657.11e-151heat stress transcription factor A-2a-like
SwissprotQ84MN71e-115HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A287SBC80.0A0A287SBC8_HORVV; Uncharacterized protein
TrEMBLA0A287SBJ10.0A0A287SBJ1_HORVV; Uncharacterized protein
STRINGMLOC_51191.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-90heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]