PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51238.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CO-like
Protein Properties Length: 247aa    MW: 25161.9 Da    PI: 7.4604
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51238.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-061456542
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                   C+ ++   + l+C  +   lC  C  + H+       H++vpl
  MLOC_51238.1 14 ACAVCGGS-AALYCPADAAALCVPCDAAVHSAnplasrHERVPL 56
                  6*****99.*********************66999999999986 PP
2CCT69.68e-24164207144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   R+a+++RY+eKrk+RkF K+irY+sRKa+Ae RpRvKGrFvk++
  MLOC_51238.1 164 RAARVMRYREKRKNRKFHKTIRYASRKAYAEARPRVKGRFVKRP 207
                   99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7271056IPR000315B-box-type zinc finger
SMARTSM003363.2E-131056IPR000315B-box-type zinc finger
CDDcd000215.06E-91556No hitNo description
PfamPF062038.9E-19164206IPR010402CCT domain
PROSITE profilePS5101716.559164206IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MESEGSTSAN GGAACAVCGG SAALYCPADA AALCVPCDAA VHSANPLASR HERVPLAAAV  60
AVAATSGVYD GLFAADDEGA ASWPTPVQGS PNSGSSGFSN GSGVEVSLFD LLSDVDLVAT  120
GAGGSVSSDG GVAPLWLQPG LVSAAWNSSW SASEAVVVPS PADRAARVMR YREKRKNRKF  180
HKTIRYASRK AYAEARPRVK GRFVKRPAAA ATDDGNTSAA EAAKFWLSFS DNSVGFHVAS  240
HGVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658980.0AK365898.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182019.11e-135zinc finger protein CONSTANS-LIKE 2-like
TrEMBLM0WGG71e-175M0WGG7_HORVV; Uncharacterized protein
STRINGMLOC_51238.11e-176(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-20CONSTANS-like 5