PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51323.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20544.9 Da    PI: 9.2264
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51323.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94e-161354344
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                  i+++s r   + kR++g++KKA E+ +LCd++ +v++++++ 
  MLOC_51323.1 13 ISDDSTRRSRYKKRLKGLMKKADEMATLCDVDTCVVVYGEDE 54
                  899999999******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-9162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.021352IPR002100Transcription factor, MADS-box
CDDcd002663.93E-23488No hitNo description
SuperFamilySSF554559.68E-18697IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141353IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MARAPKKATL GYISDDSTRR SRYKKRLKGL MKKADEMATL CDVDTCVVVY GEDEAAPVVF  60
PSPAAKAVGI LKEFNGMPEL GHCKKTMDQE GLLTQRIARL REQIDRSRRE CHDSEIRYLL  120
QKIMQGNLPG LVGLTMEQLV GVGYKVDELL KSMAERTGKT HPQPPPPAPC VTPALRLQAP  180
AQQQD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51323.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727610.0AK372761.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011L24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174656.18e-72agamous-like MADS-box protein AGL80
TrEMBLM0WGT71e-133M0WGT7_HORVV; Uncharacterized protein
STRINGMLOC_51323.11e-134(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-24AGAMOUS-like 80