PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51353.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 722aa    MW: 78547.7 Da    PI: 7.0651
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51353.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.25.1e-16411449240
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   ++k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  MLOC_51353.3 411 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 449
                   689**********************************96 PP
2TCR49.49.1e-16496535140
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce CkN+ 
  MLOC_51353.3 496 RHKRGCNCKKSSCLKKYCECYQGGVGCSNNCRCETCKNTF 535
                   589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17410451IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.996411536IPR005172CRC domain
PfamPF036388.0E-12413448IPR005172CRC domain
SMARTSM011141.6E-15496537IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-11498534IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MQDSPLFSFI DSLSPIEPLK SAYSGNGLQA YHQSLNITSV SSIFTSPHDN AHKESKKTKS  60
SFADYTENEL CMEDGTDKNK SSTSSTAVKL FACTSTITRE SHTMITCSVN ESIVDPPNGP  120
NDLPQPGRFD SGSPDHNTAP CHGVSVRSDL KQDKCPKLEA VQTTNNTMEK RKCLFSTDMQ  180
LQDGCQTSKE NQVMGCEWDD LVSVTSGELL AFDSSMDQHH TGVQLAVNNA ESCGYLLSKL  240
AGGAADISDS RTHPTTSNKA YYHEMVVGED KTENGQFFPE DKKTILSEEI QDNINEDNGC  300
IPLGCKVETQ QRGVRRRCLV FEAAGYSHRT VQKESVGDLS FSTCKGKSPA QNHRNPGKTP  360
PHVFRGGGLL DLQMDNDDCS IGGFLGNDHN SSQSSSPPKK RRKSDNGDDE SCKRCSCKKS  420
KCLKLYCECF AAGVYCSEPC SCQGCLNKPI HEEIVLSTRK HIEFRNPLAF APKVIRMSEA  480
GQEAQEDPKN TPASARHKRG CNCKKSSCLK KYCECYQGGV GCSNNCRCET CKNTFGTRDV  540
AVSAENEEMK QEDDQTESCG KEKENDQQKA NVHSEDHKLV ELVVPITPPW DVSSSLLKQP  600
NFSIAKPPRP RKARSGSSSR SSKASETVQS CKIPKAGDSV FIEEMPDILR EPSSPGIVKT  660
CSPNGKRVSP PHNALSISPN RKGGRKLILK SIPSFPSLIG DTNGGSAICS SDSATPLALG  720
PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1541353312120Protein lin-54 homolog
5fd3_B1e-1541353312120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397403PKKRRKS
2398402KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51353.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750970.0AK375097.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167196.10.0protein tesmin/TSO1-like CXC 3
TrEMBLM0WGX30.0M0WGX3_HORVV; Uncharacterized protein
STRINGMLOC_51353.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.16e-67TESMIN/TSO1-like CXC 2