PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51353.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 496aa    MW: 53988.5 Da    PI: 7.0238
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51353.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.2e-16388426240
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   ++k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  MLOC_51353.4 388 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 426
                   689**********************************96 PP
2TCR29.41.6e-09473494122
           TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                   ++k+gCnCkks+ClkkYCeC++
  MLOC_51353.4 473 RHKRGCNCKKSSCLKKYCECYQ 494
                   589******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17387428IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.715388496IPR005172CRC domain
PfamPF036385.1E-12390425IPR005172CRC domain
SMARTSM011140.048473496IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-5475494IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEDGTDKNKS STSSTAVKLF ACTSTITRES HTMITCSVNE SIVDPPNGPN DLPQPGRFDS  60
GSPDHNTAPC HGVSVRSDLK QDKCPKLEAV QTTNNTMEKR KCLFSTDMQL QDGCQTSKEN  120
QVMGCEWDDL VSVTSGELLA FDSSMDQHHT GVQLAVNNAE SCGYLLSKLA GGAADISDSR  180
THPTTSNKAY YHEMVVGEDK TENGQFFPED KKTILSEEIQ DNINEDNGCI PLGCKVETQQ  240
RGVRRRCLVF EAAGYSHRTV QKESVGDLSF STCKGKSPAQ NHRNPGKTPP HVFRGIGLHL  300
NALALTSKDK MACQDPLASA LVPSLKTEQA VHGSAGVNSV HSGGGLLDLQ MDNDDCSIGG  360
FLGNDHNSSQ SSSPPKKRRK SDNGDDESCK RCSCKKSKCL KLYCECFAAG VYCSEPCSCQ  420
GCLNKPIHEE IVLSTRKHIE FRNPLAFAPK VIRMSEAGQE AQEDPKNTPA SARHKRGCNC  480
KKSSCLKKYC ECYQVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1139049512105Protein lin-54 homolog
5fd3_B2e-1139049512105Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374380PKKRRKS
2375379KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51353.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750970.0AK375097.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167196.10.0protein tesmin/TSO1-like CXC 3
TrEMBLF2EG200.0F2EG20_HORVV; Predicted protein
STRINGMLOC_51353.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-40TESMIN/TSO1-like CXC 2