PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51405.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 161aa    MW: 17720.3 Da    PI: 8.3484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51405.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-057799123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cgk F++   L  H r+H
  MLOC_51405.2 77 HRCSVCGKAFPSYQALGGHKRRH 99
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-675101No hitNo description
Gene3DG3DSA:3.30.160.603.4E-47799IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.7E-1377101IPR007087Zinc finger, C2H2
SMARTSM003550.00347799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4717799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAVDAVRDAA AAMPSPAVSE EEEELRCAEG WGKRKRPRRQ QQRAPSEEEH LALSLLMLAR  60
GHRDQQILRP SSPAQEHRCS VCGKAFPSYQ ALGGHKRRHY EGPIGGGGAT AVASRRFDLN  120
LPALPDIVVV TERERCVPVP ADEEEVLSPL AFKKPRLMIP A
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51405.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547441e-157AK354744.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1010K21.
GenBankAK3610621e-157AK361062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173392.15e-67zinc finger protein 1-like
SwissprotQ424301e-18ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A446RUJ14e-73A0A446RUJ1_TRITD; Uncharacterized protein
STRINGMLOC_51405.12e-68(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-17salt tolerance zinc finger