PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_51673.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 324aa MW: 37008.6 Da PI: 6.5071

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_51673.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.4	7.6e-16	137	216	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r + +++ +++ t ++fvC + gk+++e+++ + +C+a +++ +++d+ w++++++ +HnH+l+ MLOC_51673.1 137 DFYNLYSWEIGFGIRYGQCRRN-AQKSRTVQDFVCGCAGKPRKENTS---------SLASNCQALIMLFLTRDNGWYIHQFRPDHNHHLS 216 6******************9.6666899******9997666.........8899**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-12	137	216	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGEGREDEMG CSDPGQEVVS TREDERSFYV YSEETRCASE AETVVQIIRE EMSPPPDCQL 60 PAVPEATTEV AKEQPADEQV PWKTRFRHGQ IPDHREPKHG RVSALEKAMR TYADCKSGHV 120 VAPEIGREFD SLAEAFDFYN LYSWEIGFGI RYGQCRRNAQ KSRTVQDFVC GCAGKPRKEN 180 TSSLASNCQA LIMLFLTRDN GWYIHQFRPD HNHHLSSSCG EKVHWPSHRA IDTHTKDIVK 240 HLRSNNIGIT KVFSVIGSFF GSMENVPFNK RSLNYLCKRM NQETAEDDIR KTVELLSELK 300 KKDPMFANNV LVDSDNKIQA LMWT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_51673.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356550	0.0	AK356550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1036D16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198214.1	8e-93	protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBL	F2CY46	0.0	F2CY46_HORVV; Predicted protein
STRING	MLOC_51673.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	9e-12	FAR1-related sequence 10