PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51688.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Nin-like
Protein Properties Length: 216aa    MW: 22969.1 Da    PI: 8.9151
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51688.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK35.91.5e-111213252
        RWP-RK 32 LKriCRqyGIkRWPhRkiksl 52
                  +KriCRq+GI+RWP+Rki+++
  MLOC_51688.1  1 MKRICRQHGISRWPFRKISKV 21
                  7*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020428.1E-9121IPR003035RWP-RK domain
PROSITE profilePS5151911.411142IPR003035RWP-RK domain
SuperFamilySSF542773.92E-20103176No hitNo description
PROSITE profilePS5174516.761107204IPR000270PB1 domain
SMARTSM006667.7E-19107204IPR000270PB1 domain
PfamPF005641.7E-13108176IPR000270PB1 domain
CDDcd064072.35E-33108180No hitNo description
Gene3DG3DSA:3.10.20.2405.2E-24108174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKRICRQHGI SRWPFRKISK VNRALGKIRR AAIESVDCSR KQTTADASSS SSSSSSRRAP  60
APHLPCLSSA LGEDTSSQDS SQDPPPLTKA TLPKSLLRRS NGAVGELVTI KASYKGDIIR  120
FRVPCSAGVA AVKEEVAKRL GLDARAFDVK YLDDDHEWVL LSCDADFQEC LDVAPVLPAS  180
ASTAVAGGAA ASVSPVVRLM VQEVADNLRS SCGSSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643140.0AK364314.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023L01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153726.11e-113protein NLP3-like isoform X2
TrEMBLM0WI041e-153M0WI04_HORVV; Uncharacterized protein
STRINGMLOC_51688.11e-154(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.11e-23NIN like protein 7