PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52115.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 331aa    MW: 36450.4 Da    PI: 6.7699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52115.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-18117170356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  MLOC_52115.1 117 KKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 170
                   4568999**********************************************9 PP
2HD-ZIP_I/II130.66.2e-42116206191
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
  MLOC_52115.1 116 EKKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSEI 206
                   69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.941112172IPR001356Homeobox domain
SuperFamilySSF466893.17E-19113174IPR009057Homeodomain-like
SMARTSM003891.1E-16115176IPR001356Homeobox domain
CDDcd000865.01E-17117173No hitNo description
PfamPF000462.0E-15117170IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-19119179IPR009057Homeodomain-like
PRINTSPR000311.1E-5143152IPR000047Helix-turn-helix motif
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5152168IPR000047Helix-turn-helix motif
PfamPF021831.3E-15172211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASNGMASSP SAFFPPNFLL HMQQAPPPHD PQEHHQHHHH HHHEHHLPPP HPQHNPFLPS  60
PQCPSLQDFR GGLSPMLGKR PAMYGGGDGG CDEVTGGGGG ANXEETSDDG SQLGGEKKRR  120
LNVEQVRTLE KNFEVANKLE PERKMQLARA LGLQPRQVAI WFQNRRARWK TKQLEKDYDV  180
LKRQFDAVKA ENDALLSHNK KLQSEILGLK GCREAASELI NLNKETEASC SNRSENSSEI  240
NLDISRTPPS DGPMDAPPSH QQGGGGGGGM IPFYPSVARP AGVDIDHLLH ASVPKMEHHH  300
GAPDTASFGN LLCGVDEPPP FWPWADHQQF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52115.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590410.0AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBankAK3597470.0AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBankAK3662450.0AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188842.10.0homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-141HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A287PPL80.0A0A287PPL8_HORVV; Uncharacterized protein
TrEMBLF2D5810.0F2D581_HORVV; Predicted protein
STRINGMLOC_52115.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-80HD-ZIP family protein