PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52138.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 138aa    MW: 15322.2 Da    PI: 8.729
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52138.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.9e-096688527
                  --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                   C++f rtGtCk+Gd Ck+ H++
  MLOC_52138.1 66 VCNHFVRTGTCKFGDACKYFHPK 88
                  6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.2E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.92E-15448No hitNo description
PfamPF062201.4E-9537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.236189IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-46388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-76589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-66686IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-76688IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTAA ARRRHLQGAQ HHRARALWYD SVRRQESHGG APPLLQPDGA  60
ILGQGVCNHF VRTGTCKFGD ACKYFHPKPH AVNPALAPSG PFPGAMVQQS NFLGTQLNFI  120
GYQTVEGNSF SEPMAYNH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52138.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-60HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154677.11e-85zinc finger CCCH domain-containing protein 3
SwissprotQ0JP112e-55C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A3B6FPA42e-86A0A3B6FPA4_WHEAT; Uncharacterized protein
TrEMBLA0A446PML81e-86A0A446PML8_TRITD; Uncharacterized protein
STRINGBRADI2G08905.15e-77(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.15e-29C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]