PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52138.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 150aa    MW: 15666.5 Da    PI: 8.345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52138.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-0979101527
                   --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                    C++f rtGtCk+Gd Ck+ H++
  MLOC_52138.4  79 VCNHFVRTGTCKFGDACKYFHPK 101
                   6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2374102IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-476101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-778102IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-779101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-67999IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MLAKKDREPE GAAEGDERSR RCRWASTTAT TATSSSRTPP PPAGVISRAP STTAPVPSES  60
HGGAPPLLQP DGAILGQGVC NHFVRTGTCK FGDACKYFHP KPHAVNPALA PSGPFPGAMV  120
QQSNFLGTQL NFIGYQTVEG NSFSGDLFVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52138.4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-49HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154677.17e-50zinc finger CCCH domain-containing protein 3
SwissprotQ0JP116e-24C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A453ELP04e-64A0A453ELP0_AEGTS; Uncharacterized protein
STRINGMLOC_52138.63e-62(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-09C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]