PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52138.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 191aa    MW: 20316.4 Da    PI: 10.9016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52138.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09120142527
                   --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                    C++f rtGtCk+Gd Ck+ H++
  MLOC_52138.6 120 VCNHFVRTGTCKFGDACKYFHPK 142
                   6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.23115143IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4117142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6119143IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-7120142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5120140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MLAKKDREVR PKETRGAGDA AGQVLLRLLR QAVPGHRRRP QASSPGRPAP PRPCPLVRLR  60
PPPRLRPQPP LQACGAFPRT PCPPPPPLDP KPNPVSSSAE SHGGAPPLLQ PDGAILGQGV  120
CNHFVRTGTC KFGDACKYFH PKPHAVNPAL APSGPFPGAM VQQSNFLGTQ LNFIGYQTVE  180
GNSFSGDLFV A
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52138.6
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-129HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A453ELP02e-52A0A453ELP0_AEGTS; Uncharacterized protein
STRINGMLOC_52138.61e-133(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.16e-09C3H family protein