PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52196.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 260aa    MW: 28246.9 Da    PI: 8.9295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52196.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014233254323
                   ETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                   Cp+C+k F ++ +L+ H  + H
  MLOC_52196.1 233 CPKCSKGFQDPVLLVEHVEReH 254
                   *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.102.0E-962122IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.57E-964116No hitNo description
PfamPF014283.4E-872111IPR000058Zinc finger, AN1-type
SMARTSM003550.8194217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196217IPR007087Zinc finger, C2H2
PROSITE profilePS501578.683231259IPR007087Zinc finger, C2H2
SMARTSM0035512231254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MIVQVFCLQH RSYTSHKCPK ANNKDVTVVV CPLCAKGVRL NPNEDANITW ESHVNTDCDP  60
SNYQRATKKK KCPVPGCREA LTFSNTIMCK DCSKEHCLKH RFGPDHKCPG PRKPEPTFPF  120
SNMLRRSQKV EPRANSSSSS SSWWSSSLLN AASSFRSSAE AGMQKLSIAT SEAVQKAKDG  180
VTPSSSGSGS GLVEQCVQCP ARFSTVGALI EHAEKSHGNN SQPSRGKVTV DACPKCSKGF  240
QDPVLLVEHV EREHGGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52196.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2513470.0AK251347.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf113d20, mRNA sequence.
GenBankAK3609830.0AK360983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130A19.
GenBankAK3671740.0AK367174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157729.11e-167zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-138SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLM0WJV00.0M0WJV0_HORVV; Uncharacterized protein
STRINGMLOC_52196.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.14e-94C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]