PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52271.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 454aa MW: 49106.1 Da PI: 6.7367

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52271.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3.1e-32	260	314	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFv++v++LGG+++AtPk il+lm+ +gLt++h+kSHLQkYR+ MLOC_52271.2 260 KTRIRWTPELHERFVDCVSKLGGADRATPKGILKLMNSDGLTIYHIKSHLQKYRM 314 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.658	257	317	IPR017930	Myb domain
SuperFamily	SSF46689	1.09E-17	258	314	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-29	259	315	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	260	315	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	264	313	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-21	351	397	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MFSVNTGASK NQAKKIRLHD GMMPLCDPSR APSSEARQLS ASPTGLSALH QELFVSSGFQ 60 QQQHGGAGAG WAREEYYAAP QRSAFAQSCV GSSTAAFYAA EHLLGIGQFD GAPLGMLPPA 120 AAMMPAVAAR TRPESGDMYR PLELDPVMLR ADQSPSVRTY YVRPQQRPDP VELELPLPPA 180 HLQQERGVHH GLFGNHPTIK PHSFSSPHLH VPSMEAPSSS SSSLLSQMES HSQQSARSSV 240 GAPATPTGAG SVSAPPPPSK TRIRWTPELH ERFVDCVSKL GGADRATPKG ILKLMNSDGL 300 TIYHIKSHLQ KYRMAKYMPA PSSSSSSEGK QHEKRAAGGD TQHDLDPKTG MHITEALRVQ 360 LDVQRRLHEQ LEIQRRLQVR IEEQGKRLQK MFEDQLKASG GNSAPAAPDP NTVLFPAAAA 420 GDQEEDAVFV DDDDDEVQII SVASGSYDDE LLAL

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MFSVNTGASK NQAKKIRLHD GMMPLCDPSR APSSEARQLS ASPTGLSALH QELFVSSGFQ  60
QQQHGGAGAG WAREEYYAAP QRSAFAQSCV GSSTAAFYAA EHLLGIGQFD GAPLGMLPPA  120
AAMMPAVAAR TRPESGDMYR PLELDPVMLR ADQSPSVRTY YVRPQQRPDP VELELPLPPA  180
HLQQERGVHH GLFGNHPTIK PHSFSSPHLH VPSMEAPSSS SSSLLSQMES HSQQSARSSV  240
GAPATPTGAG SVSAPPPPSK TRIRWTPELH ERFVDCVSKL GGADRATPKG ILKLMNSDGL  300
TIYHIKSHLQ KYRMAKYMPA PSSSSSSEGK QHEKRAAGGD TQHDLDPKTG MHITEALRVQ  360
LDVQRRLHEQ LEIQRRLQVR IEEQGKRLQK MFEDQLKASG GNSAPAAPDP NTVLFPAAAA  420
GDQEEDAVFV DDDDDEVQII SVASGSYDDE LLAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	260	317	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	260	317	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	260	317	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	260	317	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52271.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364332	0.0	AK364332.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023N07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165251.1	0.0	uncharacterized protein LOC109750710 isoform X2
TrEMBL	M0WK26	0.0	M0WK26_HORVV; Uncharacterized protein
STRING	MLOC_52271.4	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6933	37	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	9e-56	G2-like family protein