PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52271.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 237aa MW: 25711.8 Da PI: 6.4244

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52271.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFv++v++LGG+++AtPk il+lm+ +gLt++h+kSHLQkYR+ MLOC_52271.5 43 KTRIRWTPELHERFVDCVSKLGGADRATPKGILKLMNSDGLTIYHIKSHLQKYRM 97 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.658	40	100	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-18	41	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-30	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-10	47	96	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-22	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
PAAGSFHGHE YALKLQLAAR SSVGAPATPT GAGSVSAPPP PSKTRIRWTP ELHERFVDCV 60 SKLGGADRAT PKGILKLMNS DGLTIYHIKS HLQKYRMAKY MPAPSSSSSS EGKQHEKRAA 120 GGDTQHDLDP KTGMHITEAL RVQLDVQRRL HEQLEIQRRL QVRIEEQGKR LQKMFEDQLK 180 ASGGNSAPAA PDPNTVLFPA AAAGDQEEDA VFVDDDDDEV QIISVASGSY DDELLAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-25	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-25	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-25	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-25	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-25	43	100	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52271.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370962	0.0	AK370962.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2121B01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165250.1	1e-117	uncharacterized protein LOC109750710 isoform X1
Refseq	XP_020165251.1	1e-117	uncharacterized protein LOC109750710 isoform X2
Swissprot	Q0WVU3	3e-57	PHL5_ARATH; Myb family transcription factor PHL5
Swissprot	Q9SJW0	3e-58	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	F2E488	1e-174	F2E488_HORVV; Predicted protein (Fragment)
STRING	MLOC_52271.4	1e-157	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-58	G2-like family protein