PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52271.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 361aa    MW: 38840 Da    PI: 9.0767
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52271.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.2e-32268322155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+r+rWtpeLHerFv++v++LGG+++AtPk il+lm+ +gLt++h+kSHLQkYR+
  MLOC_52271.6 268 KTRIRWTPELHERFVDCVSKLGGADRATPKGILKLMNSDGLTIYHIKSHLQKYRM 322
                   68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.658265325IPR017930Myb domain
SuperFamilySSF466897.7E-18266322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-29267323IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-24268323IPR006447Myb domain, plants
PfamPF002491.1E-9272321IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVLFLVLVVC SVNTGASKNQ AKKIRLHDGM MPLCDPSRAP SSEARQLSAS PTGLSALHQE  60
LFVSSGFQQQ QHGGAGAGWA REEYYAAPQR SAFAQSCVGS STAAFYAAEH LLGIGQFDGA  120
PLGMLPPAAA MMPAVAARTR PESGDMYRPL ELDPVMLRAD QSPSVRTYYV RPQQRPDPVE  180
LELPLPPAHL QQERGVHHGL FGNHPTIKPH SFSSPHLHVP SMEAPSSSSS SLLSQMESHS  240
QQSARSSVGA PATPTGAGSV SAPPPPSKTR IRWTPELHER FVDCVSKLGG ADRATPKGIL  300
KLMNSDGLTI YHIKSHLQKY RMAKYMPAPS SSSSSEGKQH EKRAAGGDTQ HDLDPKTYLP  360
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-23268325158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-23268325158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-23268325158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-23268325158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23268325259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52271.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643320.0AK364332.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165251.11e-176uncharacterized protein LOC109750710 isoform X2
TrEMBLM0WK300.0M0WK30_HORVV; Uncharacterized protein
STRINGMLOC_52271.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.23e-31G2-like family protein