PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52315.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NF-YA

Protein Properties

Length: 214aa MW: 23080.4 Da PI: 8.4262

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52315.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.2	1.1e-32	107	163	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF MLOC_52315.1 107 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 163 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-35	105	166	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.934	106	166	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.3E-27	108	163	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	109	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	111	131	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	140	163	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTSVADAVSG DHRADEQQQK QAAHGNQEEA PATSIGNQAM AATPSTDYVT PYGHQEACHA 60 MQGQIAYPTI DPYYGSLYAA YGGQPMMHPP MVGMHAAAIP LPTDAIEEPV YVNAKQYNAI 120 LRRRQSRAKA ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK 180 DKQNGVAPRS SNGQPSSSQS PKGATSADKT GNPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-22	106	179	1	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52315.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363934	0.0	AK363934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020D05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186179.1	1e-142	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_020186180.1	1e-142	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	3e-43	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	M0WK99	1e-156	M0WK99_HORVV; Uncharacterized protein
STRING	MLOC_52315.1	1e-157	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-39	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]