PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52315.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YA
Protein Properties Length: 163aa    MW: 18076.6 Da    PI: 8.7336
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52315.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA49.91e-15107142137
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                   +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rk 
  MLOC_52315.3 107 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKV 142
                   69****************************.999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-7105153IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.116106141IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-11108142IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MTSVADAVSG DHRADEQQQK QAAHGNQEEA PATSIGNQAM AATPSTDYVT PYGHQEACHA  60
MQGQIAYPTI DPYYGSLYAA YGGQPMMHPP MVGMHAAAIP LPTDAIEEPV YVNAKQYNAI  120
LRRRQSRAKA ESERKLIKGR KVNAYKRIYV LYNLKILIRC FCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52315.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3639340.0AK363934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186179.14e-94nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_020186180.14e-94nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLM0WKA11e-118M0WKA1_HORVV; Uncharacterized protein
STRINGMLOC_52315.11e-99(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-23nuclear factor Y, subunit A1