PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52321.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

SBP

Protein Properties

Length: 328aa MW: 35327.2 Da PI: 7.4382

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52321.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	49.2	1.4e-15	41	72	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l efDe krsCr+rL++hn+rrrk+q+ MLOC_52321.1 41 CRFHLLGEFDEVKRSCRKRLDGHNRRRRKPQP 72 69***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	13.015	1	70	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-12	41	74	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.7E-4	41	57	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-7	42	69	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MTGALFFFVL ASDQDLYSSF HAEFVVVYLE KCLLPDQTVV CRFHLLGEFD EVKRSCRKRL 60 DGHNRRRRKP QPDPLNPAGL FANHHGVPRF ASYPQIFSPT SMAEPKWPGG IAVKTEADAF 120 HEQYYSFNGA ASLFHHGKPE RKHFPFLTDG GDATFGCQPP AFTITPSSES SSNSSRHSNG 180 KTTMFAHDGG PDHNCALSLL SDNPAPAHIM NPAEAHHLGG GGGVTIQYGG GGGGKVARLH 240 NNGDVSLTGL SYVSLGDKGA PMLLHTSNRS QHAAATATTA VTTSTAPAPT ASQMQQYHGY 300 YHHQHQVGAD QGNHQDAGGM HALPFSSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	69	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00555	DAP	Transfer from AT5G50570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52321.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356077	0.0	AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178580.1	1e-166	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	1e-66	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	M0WKB0	0.0	M0WKB0_HORVV; Uncharacterized protein
STRING	MLOC_52321.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-16	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]