PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52439.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 237aa    MW: 27112.7 Da    PI: 9.6963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52439.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
     MLOC_52439.6 10 KGPWTEQEDMQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding55.99.9e-1863108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
     MLOC_52439.6  63 RGRMTPHEERLILELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.544557IPR017930Myb domain
SuperFamilySSF466899.36E-309104IPR009057Homeodomain-like
SMARTSM007172.1E-15959IPR001005SANT/Myb domain
PfamPF002493.8E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-201164IPR009057Homeodomain-like
CDDcd001679.79E-121257No hitNo description
PROSITE profilePS5129425.95558112IPR017930Myb domain
SMARTSM007171.4E-1662110IPR001005SANT/Myb domain
PfamPF002493.3E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2465111IPR009057Homeodomain-like
CDDcd001672.69E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVTVREETRK GPWTEQEDMQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGRMTPHE ERLILELHAR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRNVS  120
PSSSSSSVTY QSCQPQTPSI IGIGDQELHG GNSCITSILK GTPGDMDGYL MDQIWMEIEA  180
PSGVNFHDGK DNSYSSPSGP PLTSPMWDYY SPESGWKMDE IKMAPQVGHS KGIGPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2871121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52439.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507730.0AK250773.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86c09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201687.11e-164myb-related protein MYBAS2-like isoform X1
SwissprotQ4JL761e-129MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLM0WKQ51e-176M0WKQ5_HORVV; Uncharacterized protein
STRINGMLOC_52439.61e-177(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-79myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]