PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52504.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 223aa    MW: 24215.6 Da    PI: 4.1583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52504.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY461.1e-1417601858
                  -SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY 18 sefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                  +++ r+YYrCt++   gC ++k+v+r++edp +++++Y+geH++
  MLOC_52504.1 17 AQHCRAYYRCTYQktqGCAATKQVQRADEDPALFDVIYHGEHTC 60
                  6899********98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.5E-141162IPR003657WRKY domain
PfamPF031069.4E-151560IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-141660IPR003657WRKY domain
SuperFamilySSF1182901.31E-121660IPR003657WRKY domain
PROSITE profilePS5081112.1972158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MPPWRSFFAV PDDLDHAQHC RAYYRCTYQK TQGCAATKQV QRADEDPALF DVIYHGEHTC  60
LHKTAAAMVQ PDGQNQDAQS LLQNLSSSLT VKTEGLIAAG TQGWSTTTPF SFSSPAVSGM  120
TPPEHHPFSA PSTPENCFVS MPTSLEPSPA TSGSNHMCFN PFQAQSELQT MVSALVEATS  180
MPPADTEEAG FAYWSFDDSA LDVNSFDEDV TNFDISAFLA SDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52504.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3555330.0AK355533.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1022C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200628.11e-117WRKY transcription factor 6-like
TrEMBLM0WKX31e-164M0WKX3_HORVV; Uncharacterized protein
STRINGMLOC_52504.21e-140(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-15WRKY family protein