PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52601.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 304aa    MW: 31487.2 Da    PI: 9.6273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52601.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-053760225
                  -S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                  k ++C  f+ t  C++G+ C+FaH
  MLOC_52601.1 37 KSKPCTKFFSTIGCPFGEGCHFAH 60
                  7789******************** PP
2zf-CCCH25.32.7e-0896121227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   kt+ C  +     Ck+Gd+C+FaHg+
  MLOC_52601.1  96 KTRMCTKYNTAEGCKFGDKCHFAHGE 121
                   89**********************96 PP
3zf-CCCH38.42.1e-12270295127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ykt++C +f++ GtC +G+rC+FaHg+
  MLOC_52601.1 270 YKTKICENFLK-GTCTFGERCHFAHGE 295
                   9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.63562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6343563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-83660IPR000571Zinc finger, CCCH-type
PfamPF146080.464360No hitNo description
SMARTSM003560.1294121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.65794122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-895125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-1495127IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-596121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.103.6E-15166236IPR004088K Homology domain, type 1
SMARTSM003227.1E-10167237IPR004087K Homology domain
PROSITE profilePS5008413.795168232IPR004088K Homology domain, type 1
PfamPF000132.0E-10170233IPR004088K Homology domain, type 1
CDDcd001051.79E-12170228No hitNo description
SuperFamilySSF547919.88E-14170265IPR004088K Homology domain, type 1
SuperFamilySSF902295.89E-9268299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-14268299IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-9269295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.619269296IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-10270295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDAAARKRSR PESANGGAAG GKRSRESESQ QTGLSSKSKP CTKFFSTIGC PFGEGCHFAH  60
FVPGGYQAVS KSHNLGHAAV SAPSRTPADH AASGVKTRMC TKYNTAEGCK FGDKCHFAHG  120
ERELGRPPSS YMSQESSYAP PTGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA  180
GGIIGKGGVN TKQICRVTGV KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIGSIS  240
ASMPSKNPAG AAAPAGRGGG GGGPGGRSNY KTKICENFLK GTCTFGERCH FAHGETEQRK  300
GAAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506930.0AK250693.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf85e04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173136.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7XPK11e-143C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A3B6B7590.0A0A3B6B759_WHEAT; Uncharacterized protein
STRINGMLOC_52601.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-67C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]