PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52601.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 206aa    MW: 21389 Da    PI: 8.7479
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52601.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.6e-07223627
                  -SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                  C  +     Ck+Gd+C+FaHg+
  MLOC_52601.2  2 CTKYNTAEGCKFGDKCHFAHGE 23
                  888999889***********96 PP
2zf-CCCH39.11.2e-12172197127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ykt++C +f++ GtC +G+rC+FaHg+
  MLOC_52601.2 172 YKTKICENFLK-GTCTFGERCHFAHGE 197
                   9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-11129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389124IPR000571Zinc finger, CCCH-type
SMARTSM0035612123IPR000571Zinc finger, CCCH-type
PfamPF146080.016222No hitNo description
Gene3DG3DSA:3.30.1370.101.7E-1568138IPR004088K Homology domain, type 1
SMARTSM003227.1E-1069139IPR004087K Homology domain
PROSITE profilePS5008413.79570134IPR004088K Homology domain, type 1
SuperFamilySSF547914.1E-1472167IPR004088K Homology domain, type 1
CDDcd001051.36E-1272130No hitNo description
PfamPF000139.7E-1172135IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-14170201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-9170201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.619171198IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-9171197IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10172197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MCTKYNTAEG CKFGDKCHFA HGERELGRPP SSYMSQESSY APPTGGRYGG RHEPPPPASM  60
GPPAGNFGAS STCKVSVDAA LAGGIIGKGG VNTKQICRVT GVKLSIRDHE SNPDLKNIEL  120
EGSFDQIKQA NDMVRDLIGS ISASMPSKNP AGAAAPAGRG GGGGGPGGRS NYKTKICENF  180
LKGTCTFGER CHFAHGETEQ RKGAAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52601.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506930.0AK250693.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf85e04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173136.11e-119zinc finger CCCH domain-containing protein 31-like
SwissprotQ7XPK16e-91C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A3B6B7591e-126A0A3B6B759_WHEAT; Uncharacterized protein
STRINGMLOC_52601.11e-149(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]