PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52706.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 248aa MW: 27724.5 Da PI: 10.0134

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52706.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.3e-32	60	114	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF +av++LGG++kAtPk+i+++m+++gLtl+h+kSHLQk+Rl MLOC_52706.2 60 KPRLKWTPELHERFADAVKKLGGPDKATPKAIMRVMGIPGLTLYHLKSHLQKFRL 114 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	57	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-30	58	115	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.7E-16	59	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	60	115	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-10	62	112	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-24	161	207	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MFHVCLIGWQ MYHQQQQQFH DHRQHMSSRP SLSPETKFFM KGQGGAGGGD SGLILSTDAK 60 PRLKWTPELH ERFADAVKKL GGPDKATPKA IMRVMGIPGL TLYHLKSHLQ KFRLSKNLQT 120 QANAVHAKNV YGFGVATDKA CEGRGSPADH LNRETNTSRS MHINDALQMQ IEVQRRLHEQ 180 IEVQRHLQLR IEAQGKYLHS VLEKAQEALG KQHAVAGLEA AEPPQRLPEL PSSVRRGLLQ 240 NDGSADDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	60	116	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52706.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362598	0.0	AK362598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161185.1	1e-144	myb-related protein 1-like
Swissprot	Q9FK47	5e-74	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A287H764	0.0	A0A287H764_HORVV; Uncharacterized protein
STRING	MLOC_52706.1	1e-175	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	2e-70	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]