PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52732.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 206aa    MW: 24060.6 Da    PI: 10.2415
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52732.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.36.7e-2011104191
          FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +f+n+Y++ +GFsv++ + k++   +rn+eit+ t++C+k+gk++e + +  +  r++++  +t+ k  l+++++ +g+wevt+++l+HnHel+p
  MLOC_52732.1  11 EFFNFYSHVAGFSVTTVAVKRTsskQRNNEITQITMKCNKHGKTKEVEAEsVVPIRKSTVIAKTNYKVVLVLSEK-EGTWEVTRVNLDHNHELTP 104
                   6************98766665556689999**************9988775789999****************99.****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-1911104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRFKSKQEGQ EFFNFYSHVA GFSVTTVAVK RTSSKQRNNE ITQITMKCNK HGKTKEVEAE  60
SVVPIRKSTV IAKTNYKVVL VLSEKEGTWE VTRVNLDHNH ELTPNSRFFR SHKYMSDEEK  120
CLIRTLKRTN LETRRIMAIL AYLRGGLALL PYTKKHVTNY AGTINREVTN TDMMEVVRMF  180
NKKQVESPGF YYSFELDEEN KVRSIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52732.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148036.11e-114protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM0WLN71e-151M0WLN7_HORVV; Uncharacterized protein
STRINGMLOC_52732.11e-152(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2306624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1-related sequence 5