PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52896.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 229aa    MW: 24901.2 Da    PI: 6.6201
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52896.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-085292046
                     TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46
                     G ++W+ Ia+ ++ gRt++++k++w++
     MLOC_52896.1  5 G-RRWSIIAAQLP-GRTDNDIKNYWNT 29
                     4.45*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.872135IPR017930Myb domain
SuperFamilySSF466895.71E-8436IPR009057Homeodomain-like
PfamPF002491.5E-6529IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12535IPR009057Homeodomain-like
CDDcd001673.09E-6631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MPLVGRRWSI IAAQLPGRTD NDIKNYWNTR LKKKLFGKQS RKDQRQHQFG RQGANGGHKE  60
EASEGSAGNN GVAAGAYNWH QHTMAMPPHP MPGSMVEGNL IGEGVDESIR KLLFKLGGSS  120
FAALPAPPCL PPPMYGEAPN FVAPSVHTAP LNEGGIHCSS VLPALELDES FQFNQVKLDG  180
LECFFGMGDQ SMRWNEVSPL VCPNTTVASS SQGMQQYCLL EEPVDLGLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648050.0AK364805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156621.11e-157myb-related protein Myb4-like
TrEMBLM0WMA91e-165M0WMA9_HORVV; Uncharacterized protein
STRINGMLOC_52896.31e-166(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.18e-17myb domain protein 84