PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52982.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 63aa    MW: 7336.33 Da    PI: 11.9703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52982.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-094401147
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     l++d+  ++G g+W+ I+r     Rt+ q+ s+ qky
     MLOC_52982.1  4 LFLDGLDKYGRGDWRNISRFAVRSRTPTQVASHAQKY 40
                     8***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.589145IPR017930Myb domain
SuperFamilySSF466899.79E-12246IPR009057Homeodomain-like
CDDcd001671.04E-6341No hitNo description
TIGRFAMsTIGR015573.9E-12344IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-6340IPR009057Homeodomain-like
PfamPF002492.8E-6440IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MRRLFLDGLD KYGRGDWRNI SRFAVRSRTP TQVASHAQKY FIRQASAATR DSKRKSIHDI  60
TTP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3673736e-96AK367373.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158558.12e-35transcription factor DIVARICATA-like
SwissprotQ8S9H72e-22DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0WMN42e-38M0WMN4_HORVV; Uncharacterized protein
STRINGMLOC_52982.26e-37(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.11e-24MYB_related family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]