PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5337.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 297aa    MW: 30833 Da    PI: 10.2781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5337.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.1e-073559226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k ++C  f+ t  C++G++C+F H 
  MLOC_5337.2 35 KSKPCTKFFSTAGCPFGSSCHFLHN 59
                 7789********************7 PP
2zf-CCCH23.78.5e-08100125227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ f     Ck G++C+FaHg+
  MLOC_5337.2 100 KTRLCNKFNTAEGCKWGNKCHFAHGE 125
                  9***********************96 PP
3zf-CCCH37.54.1e-12263288127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC++f + G C +GdrC+FaHg+
  MLOC_5337.2 263 FKTKLCDNFNK-GSCTFGDRCHFAHGE 288
                  69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1593361IPR000571Zinc finger, CCCH-type
SMARTSM003560.363360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-63461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-83459IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-53559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-1496130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-897129IPR000571Zinc finger, CCCH-type
SMARTSM003560.498125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.11298126IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5100125IPR000571Zinc finger, CCCH-type
SMARTSM003226.8E-11168238IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.4E-15169237IPR004088K Homology domain, type 1
PROSITE profilePS5008414.99169233IPR004088K Homology domain, type 1
PfamPF000132.3E-11171235IPR004088K Homology domain, type 1
SuperFamilySSF547915.55E-15171263IPR004088K Homology domain, type 1
CDDcd001051.02E-13171234No hitNo description
Gene3DG3DSA:4.10.1000.102.2E-16261293IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8262288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-9262292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.943262289IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10263288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDAGRKRAVP EGTNGGAATK RARESESVQT GVGSKSKPCT KFFSTAGCPF GSSCHFLHNF  60
PGGHQAVSKM TNLGGPAVSA PPGRMPMGPG VPDGPPPSMK TRLCNKFNTA EGCKWGNKCH  120
FAHGERELGK PMLLNNSMAP PMGPRPNGHF QPPPMPGPDM VPPSTFGASA TAKISVDASL  180
AGAIIGKGGV NTKHISRMTG AKLAIRDNEA DPNHKNIELE GSFDQVNHAS AMVKELILRI  240
GGNAPPQAKN AGRGPAGGGG SNFKTKLCDN FNKGSCTFGD RCHFAHGESE LRKSAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5337.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3566640.0AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159827.10.0zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ69XQ31e-166C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLF2CYF90.0F2CYF9_HORVV; Predicted protein
STRINGMLOC_5337.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-55C3H family protein