PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53628.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 99aa    MW: 11279.8 Da    PI: 7.2481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53628.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-071661345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++ E + + +a + +G g    W+++a+ mg +++ +++  ++q
     MLOC_53628.1 16 EWSKKENKMFEEALAYYGEGapnLWEKVANAMGGTKSVEEVCRHFQ 61
                     6********************************99*****999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.063964IPR017877Myb-like domain
SMARTSM007172.6E-41366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-51468IPR009057Homeodomain-like
SuperFamilySSF466892.89E-111571IPR009057Homeodomain-like
PfamPF002493.1E-61661IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSSGSPRSSS PSSYSEWSKK ENKMFEEALA YYGEGAPNLW EKVANAMGGT KSVEEVCRHF  60
QILVDDVQNI EYGRIPFPKY KTQGFWTVPV AFCRLQYLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-19884277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612039e-84AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176359.19e-45protein RADIALIS-like 3
SwissprotQ1A1731e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0WPY32e-58M0WPY3_HORVV; Uncharacterized protein
STRINGMLOC_53628.14e-69(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-22RAD-like 6