PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53640.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 243aa    MW: 26007.9 Da    PI: 4.0476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53640.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-0824482348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Ia++++ gRt++++k+ w+++l
     MLOC_53640.2 24 RWSKIAACLP-GRTDNEIKNVWNTHL 48
                     5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.237148IPR017877Myb-like domain
SuperFamilySSF466895.85E-82353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-122449IPR009057Homeodomain-like
CDDcd001671.88E-52448No hitNo description
PfamPF002493.8E-62448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDWLLLALIR DCVAADSLEI VACRWSKIAA CLPGRTDNEI KNVWNTHLKK RVAASAGEHK  60
KPGPKTKKKT TCAAPSPSPS PSSSTTTATT TTTNCSSGES GEQSNTSSKE PEPELDKIEI  120
PMLDLGFDID IDMLLDAVPE THCPAVSSAA TSSCTSASPP CVADDDDALL DLPEIDIVPE  180
LWSIMDGACV ETAQAPWGNA APCQGNGAEA TADEDDGKEW WLEDLEKELG LWGPIEDYQH  240
QQQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53640.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486490.0AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBankAK3696890.0AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185012.11e-100myb-related protein Zm1-like
TrEMBLF2E0L81e-154F2E0L8_HORVV; Predicted protein
STRINGMLOC_53640.11e-155(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.18e-13myb domain protein 63